Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00219.N4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 473

Length: 789
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.31


Found at i:152 original size:3 final size:3

Alignment explanation


    Indices: 139--172  Score: 59
    Period size: 3  Copynumber: 11.3  Consensus size: 3

        129 TGAACTCCTC

                 *                                       
        139 TGA TTA TGA TGA TGA TGA TGA TGA TGA TGA TGA T
          1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T

        173 TCTGGTGATG


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.32, C:0.00, G:0.29, T:0.38


Consensus pattern (3 bp):   
TGA

Found at i:294 original size:21 final size:21

Alignment explanation


    Indices: 269--314  Score: 58
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        259 CTGTGATGGG

                                  
        269 GATGGTGA-GCAGGAAGTGGAT
          1 GATGGTGATG-AGGAAGTGGAT

                       *   *     
        290 GATGGTGATGATGAATTGGAT
          1 GATGGTGATGAGGAAGTGGAT

                
        311 GATG
          1 GATG

        315 AGTTGGTGCC


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  21   21  0.95
  22    1  0.05

ACGTcount: A:0.28, C:0.02, G:0.43, T:0.26


Consensus pattern (21 bp):   
GATGGTGATGAGGAAGTGGAT
Done.