Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00950.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4685
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.34


Found at i:3474 original size:26 final size:27

Alignment explanation


    Indices: 3436--3486  Score: 68
    Period size: 26  Copynumber: 1.9  Consensus size: 27

       3426 TTCACATTTG

                              *        
       3436 GACAGTCCACCAATGG-CTGTCTGCTT
          1 GACAGTCCACCAATGGACAGTCTGCTT

                  * *                
       3462 GACAGTTCGCCAATGGACAGTCTGC
          1 GACAGTCCACCAATGGACAGTCTGC

       3487 CAAATAGCTT


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  26   14  0.67
  27    7  0.33

ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24


Consensus pattern (27 bp):   
GACAGTCCACCAATGGACAGTCTGCTT
Done.