Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00954.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 666

Length: 1110
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26


Found at i:39 original size:16 final size:17

Alignment explanation


    Indices: 10--42  Score: 59
    Period size: 16  Copynumber: 2.0  Consensus size: 17

          1 GGCTAGTGC

                             
         10 AGAGAAGAACAATGTCA
          1 AGAGAAGAACAATGTCA

                             
         27 AGAGAAG-ACAATGTCA
          1 AGAGAAGAACAATGTCA

         43 TGAATCGACA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16    9  0.56
  17    7  0.44

ACGTcount: A:0.52, C:0.12, G:0.24, T:0.12


Consensus pattern (17 bp):   
AGAGAAGAACAATGTCA
Done.