Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00240.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 717

Length: 1196
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25


Found at i:437 original size:18 final size:18

Alignment explanation


    Indices: 404--438  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        394 GCAAAAGCGG

                     * *      
        404 GAAGAAGAATAGTAACAA
          1 GAAGAAGAACAATAACAA

                             
        422 GAAGAAGAACAATAACA
          1 GAAGAAGAACAATAACA

        439 GCGACAATAA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.63, C:0.09, G:0.20, T:0.09


Consensus pattern (18 bp):   
GAAGAAGAACAATAACAA
Done.