Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga14g00250.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4553
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32
Found at i:3815 original size:186 final size:186
Alignment explanation
Indices: 3501--3873 Score: 719
Period size: 186 Copynumber: 2.0 Consensus size: 186
3491 TACACAAAGT
*
3501 ACAGTGATATATTTTTGTATTTTAAATGGGCCTGACATTATGTGACATACGATTGATAACAAACT
1 ACAGTGATATATTTTTGCATTTTAAATGGGCCTGACATTATGTGACATACGATTGATAACAAACT
3566 GGTCAGCTTAACAAAAACCACTAGTGGTTGTATACATGTTTGGTTGAAGGAGACTGACATTACTA
66 GGTCAGCTTAACAAAAACCACTAGTGGTTGTATACATGTTTGGTTGAAGGAGACTGACATTACTA
*
3631 CATCAACTGTCGCATTGGTGAAAGCTAATATTGGTCTTGACGTGTTATGCTCAAGG
131 CATCAACTGTCGCATTGGTGAAAGCTAATATTGGTCTTGACATGTTATGCTCAAGG
*
3687 ACAGTGATATATTTTTGCATTTTAAATGGGGCTGACATTATGTGACATACGATTGATAACAAACT
1 ACAGTGATATATTTTTGCATTTTAAATGGGCCTGACATTATGTGACATACGATTGATAACAAACT
3752 GGTCAGCTTAACAAAAACCACTAGTGGTTGTATACATGTTTGGTTGAAGGAGACTGACATTACTA
66 GGTCAGCTTAACAAAAACCACTAGTGGTTGTATACATGTTTGGTTGAAGGAGACTGACATTACTA
3817 CATCAACTGTCGCATTGGTGAAAGCTAATATTGGTCTTGACATGTTATGCTCAAGG
131 CATCAACTGTCGCATTGGTGAAAGCTAATATTGGTCTTGACATGTTATGCTCAAGG
3873 A
1 A
3874 AACTGACATT
Statistics
Matches: 184, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
186 184 1.00
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.32
Consensus pattern (186 bp):
ACAGTGATATATTTTTGCATTTTAAATGGGCCTGACATTATGTGACATACGATTGATAACAAACT
GGTCAGCTTAACAAAAACCACTAGTGGTTGTATACATGTTTGGTTGAAGGAGACTGACATTACTA
CATCAACTGTCGCATTGGTGAAAGCTAATATTGGTCTTGACATGTTATGCTCAAGG
Done.