Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00258.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3793
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31


Found at i:179 original size:6 final size:6

Alignment explanation


    Indices: 168--194  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

        158 TATAAATCCT

                                           
        168 TTTGCC TTTGCC TTTGCC TTTGCC TTT
          1 TTTGCC TTTGCC TTTGCC TTTGCC TTT

        195 TACCTTCTGC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.00, C:0.30, G:0.15, T:0.56


Consensus pattern (6 bp):   
TTTGCC

Done.