Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00959.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 591

Length: 985
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27


Found at i:801 original size:24 final size:24

Alignment explanation


    Indices: 753--801  Score: 64
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        743 CACTCGTAAA

                                *   
        753 TCGGATTCCGATTCTGGTTCGGGT
          1 TCGGATTCCGATTCTGGTTCAGGT

                *                    
        777 TCGGGTTCCGATTC-GGATTCAGGT
          1 TCGGATTCCGATTCTGG-TTCAGGT

             
        801 T
          1 T

        802 AGGGAGCTTT


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  23    2  0.09
  24   20  0.91

ACGTcount: A:0.10, C:0.20, G:0.33, T:0.37


Consensus pattern (24 bp):   
TCGGATTCCGATTCTGGTTCAGGT
Done.