Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00258.N5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6164
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33


Found at i:495 original size:34 final size:34

Alignment explanation


    Indices: 452--520  Score: 138
    Period size: 34  Copynumber: 2.0  Consensus size: 34

        442 CAGGATATTT

                                              
        452 TTTATTTATTACAGGATATTTAAAAGATTTTATC
          1 TTTATTTATTACAGGATATTTAAAAGATTTTATC

                                              
        486 TTTATTTATTACAGGATATTTAAAAGATTTTATC
          1 TTTATTTATTACAGGATATTTAAAAGATTTTATC

             
        520 T
          1 T

        521 CCTAACTATT


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  34   35  1.00

ACGTcount: A:0.35, C:0.06, G:0.09, T:0.51


Consensus pattern (34 bp):   
TTTATTTATTACAGGATATTTAAAAGATTTTATC
Done.