Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00258.N9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6326
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36


Found at i:3048 original size:15 final size:15

Alignment explanation


    Indices: 3028--3066  Score: 69
    Period size: 15  Copynumber: 2.6  Consensus size: 15

       3018 CTATTCTAGT

                           
       3028 GATATCCCGACTTAG
          1 GATATCCCGACTTAG

                     *     
       3043 GATATCCCGCCTTAG
          1 GATATCCCGACTTAG

                     
       3058 GATATCCCG
          1 GATATCCCG

       3067 GCTAGGTTTA


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  15   23  1.00

ACGTcount: A:0.23, C:0.31, G:0.21, T:0.26


Consensus pattern (15 bp):   
GATATCCCGACTTAG
Done.