Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00258.N12

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5477
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37


Found at i:511 original size:39 final size:39

Alignment explanation


    Indices: 457--537  Score: 126
    Period size: 39  Copynumber: 2.1  Consensus size: 39

        447 TTGTATAATT

                  *                                
        457 ACCATCGTCGTTCACCAGTCAGGCAGTCACCACCGGTAC
          1 ACCATCATCGTTCACCAGTCAGGCAGTCACCACCGGTAC

                                   *        *    * 
        496 ACCATCATCGTTCACCAGTCAGGTAGTCACCATCGGTCC
          1 ACCATCATCGTTCACCAGTCAGGCAGTCACCACCGGTAC

               
        535 ACC
          1 ACC

        538 CGTCGCCACC


Statistics
Matches: 38,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  39   38  1.00

ACGTcount: A:0.23, C:0.38, G:0.19, T:0.20


Consensus pattern (39 bp):   
ACCATCATCGTTCACCAGTCAGGCAGTCACCACCGGTAC

Found at i:3346 original size:15 final size:15

Alignment explanation


    Indices: 3326--3364  Score: 69
    Period size: 15  Copynumber: 2.6  Consensus size: 15

       3316 CTATTCTAGT

                           
       3326 GATATCCCGACTTAG
          1 GATATCCCGACTTAG

                     *     
       3341 GATATCCCGCCTTAG
          1 GATATCCCGACTTAG

                     
       3356 GATATCCCG
          1 GATATCCCG

       3365 GCTAGGTTTA


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  15   23  1.00

ACGTcount: A:0.23, C:0.31, G:0.21, T:0.26


Consensus pattern (15 bp):   
GATATCCCGACTTAG
Done.