Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00260.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1873
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36


Found at i:495 original size:34 final size:34

Alignment explanation


    Indices: 452--520  Score: 138
    Period size: 34  Copynumber: 2.0  Consensus size: 34

        442 CAGGATATTT

                                              
        452 TTTATTTATTACAGGATATTTAAAAGATTTTATC
          1 TTTATTTATTACAGGATATTTAAAAGATTTTATC

                                              
        486 TTTATTTATTACAGGATATTTAAAAGATTTTATC
          1 TTTATTTATTACAGGATATTTAAAAGATTTTATC

             
        520 T
          1 T

        521 CCTAACTATT


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  34   35  1.00

ACGTcount: A:0.35, C:0.06, G:0.09, T:0.51


Consensus pattern (34 bp):   
TTTATTTATTACAGGATATTTAAAAGATTTTATC

Found at i:1667 original size:22 final size:22

Alignment explanation


    Indices: 1638--1686  Score: 82
    Period size: 22  Copynumber: 2.3  Consensus size: 22

       1628 TTGAGCTTGA

                                  
       1638 ATTC-TAGCGAACAAGTGCAAC
          1 ATTCATAGCGAACAAGTGCAAC

                                  
       1659 ATTCATAGCGAACAAGTGCAAC
          1 ATTCATAGCGAACAAGTGCAAC

            *     
       1681 GTTCAT
          1 ATTCAT

       1687 GTGAAACTCT


Statistics
Matches: 26,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  21    4  0.15
  22   22  0.85

ACGTcount: A:0.37, C:0.22, G:0.18, T:0.22


Consensus pattern (22 bp):   
ATTCATAGCGAACAAGTGCAAC
Done.