Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00291.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 712

Length: 1188
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29


Found at i:198 original size:15 final size:15

Alignment explanation


    Indices: 174--205  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        164 ACGAAGTAGC

                 *         
        174 TCGTCTTTGTCGTTG
          1 TCGTCGTTGTCGTTG

                           
        189 TCGTCGTTGTCGTTG
          1 TCGTCGTTGTCGTTG

              
        204 TC
          1 TC

        206 TTTGTCGCAG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.00, C:0.22, G:0.28, T:0.50


Consensus pattern (15 bp):   
TCGTCGTTGTCGTTG
Done.