Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00295.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3073
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34


Found at i:2981 original size:15 final size:15

Alignment explanation


    Indices: 2963--2993  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       2953 AGTCTAATCA

                           
       2963 AGACTTGGTTAGGAT
          1 AGACTTGGTTAGGAT

                           
       2978 AGACTTGGTTAGGAT
          1 AGACTTGGTTAGGAT

             
       2993 A
          1 A

       2994 TTGATTTAGA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.29, C:0.06, G:0.32, T:0.32


Consensus pattern (15 bp):   
AGACTTGGTTAGGAT
Done.