Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00295.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3444
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35


Found at i:3352 original size:15 final size:15

Alignment explanation


    Indices: 3334--3364  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       3324 AGTCTAATCA

                           
       3334 AGACTTGGTTAGGAT
          1 AGACTTGGTTAGGAT

                           
       3349 AGACTTGGTTAGGAT
          1 AGACTTGGTTAGGAT

             
       3364 A
          1 A

       3365 TTGATTTAGA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.29, C:0.06, G:0.32, T:0.32


Consensus pattern (15 bp):   
AGACTTGGTTAGGAT
Done.