Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00967.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 909

Length: 1516
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:1422 original size:19 final size:19

Alignment explanation


    Indices: 1398--1440  Score: 59
    Period size: 19  Copynumber: 2.3  Consensus size: 19

       1388 AATCTGGAGA

                         *     
       1398 AGTTACAGAAAATGGGTTT
          1 AGTTACAGAAAATCGGTTT

                   *       *   
       1417 AGTTACATAAAATCGTTTT
          1 AGTTACAGAAAATCGGTTT

                 
       1436 AGTTA
          1 AGTTA

       1441 TTCAACTCAT


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  19   21  1.00

ACGTcount: A:0.37, C:0.07, G:0.19, T:0.37


Consensus pattern (19 bp):   
AGTTACAGAAAATCGGTTT
Done.