Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00301.N10

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 976

Length: 1627
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34


Found at i:969 original size:6 final size:6

Alignment explanation


    Indices: 960--1007  Score: 96
    Period size: 6  Copynumber: 8.0  Consensus size: 6

        950 TCTCTCTCTC

                                                                   
        960 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
          1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA

       1008 ATAAGTTCAA


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   42  1.00

ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50


Consensus pattern (6 bp):   
TATGTA

Found at i:1552 original size:16 final size:16

Alignment explanation


    Indices: 1531--1562  Score: 55
    Period size: 16  Copynumber: 2.0  Consensus size: 16

       1521 GTAATTTATG

                            
       1531 TATGTATGCATGTAAA
          1 TATGTATGCATGTAAA

                    *       
       1547 TATGTATGTATGTAAA
          1 TATGTATGCATGTAAA

       1563 GATCTTGCTG


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.38, C:0.03, G:0.19, T:0.41


Consensus pattern (16 bp):   
TATGTATGCATGTAAA
Done.