Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00969.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5259
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:5084 original size:19 final size:19

Alignment explanation


    Indices: 5038--5085  Score: 71
    Period size: 19  Copynumber: 2.6  Consensus size: 19

       5028 GTATATATTT

                               
       5038 TAAA-TTTATTTAGGTAGA
          1 TAAATTTTATTTAGGTAGA

                 *             
       5056 TAAATCTTATTTAGGTAGA
          1 TAAATTTTATTTAGGTAGA

               *       
       5075 TAAGTTTTATT
          1 TAAATTTTATT

       5086 CATATTCTAG


Statistics
Matches: 26,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  18    4  0.15
  19   22  0.85

ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48


Consensus pattern (19 bp):   
TAAATTTTATTTAGGTAGA

Found at i:5161 original size:41 final size:41

Alignment explanation


    Indices: 5102--5189  Score: 158
    Period size: 41  Copynumber: 2.1  Consensus size: 41

       5092 CTAGGAATAT

                       *                              
       5102 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
          1 TTTT-TTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA

                                                     
       5144 TTTTTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
          1 TTTTTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA

                 
       5185 TTTTT
          1 TTTTT

       5190 CCAATTAGGA


Statistics
Matches: 45,  Mismatches: 1, Indels: 1
        0.96            0.02        0.02

Matches are distributed among these distances:
  41   41  0.91
  42    4  0.09

ACGTcount: A:0.30, C:0.03, G:0.14, T:0.53


Consensus pattern (41 bp):   
TTTTTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
Done.