Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00969.P3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3677
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.31


Found at i:3502 original size:19 final size:19

Alignment explanation


    Indices: 3456--3503  Score: 71
    Period size: 19  Copynumber: 2.6  Consensus size: 19

       3446 GTATATATTT

                               
       3456 TAAA-TTTATTTAGGTAGA
          1 TAAATTTTATTTAGGTAGA

                 *             
       3474 TAAATCTTATTTAGGTAGA
          1 TAAATTTTATTTAGGTAGA

               *       
       3493 TAAGTTTTATT
          1 TAAATTTTATT

       3504 CATATTCTAG


Statistics
Matches: 26,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  18    4  0.15
  19   22  0.85

ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48


Consensus pattern (19 bp):   
TAAATTTTATTTAGGTAGA

Found at i:3579 original size:41 final size:41

Alignment explanation


    Indices: 3520--3607  Score: 158
    Period size: 41  Copynumber: 2.1  Consensus size: 41

       3510 CTAGGAATAT

                       *                              
       3520 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
          1 TTTT-TTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA

                                                     
       3562 TTTTTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
          1 TTTTTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA

                 
       3603 TTTTT
          1 TTTTT

       3608 CCAATTAGGA


Statistics
Matches: 45,  Mismatches: 1, Indels: 1
        0.96            0.02        0.02

Matches are distributed among these distances:
  41   41  0.91
  42    4  0.09

ACGTcount: A:0.30, C:0.03, G:0.14, T:0.53


Consensus pattern (41 bp):   
TTTTTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
Done.