Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00316.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4099
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.31


Found at i:1473 original size:23 final size:25

Alignment explanation


    Indices: 1447--1506  Score: 63
    Period size: 22  Copynumber: 2.5  Consensus size: 25

       1437 TGATACCTTT

                                     
       1447 TTTTTTTTGCTTGA-TTTT-AATTA
          1 TTTTTTTTGCTTGATTTTTGAATTA

                   *              *  *
       1470 -TTTTTTAGCTTTGATTTTTGATTTT
          1 TTTTTTTTGC-TTGATTTTTGAATTA

                        
       1495 TTTTTTTTGCTT
          1 TTTTTTTTGCTT

       1507 TGGGGTTTAG


Statistics
Matches: 29,  Mismatches: 4, Indels: 6
        0.74            0.10        0.15

Matches are distributed among these distances:
  22    8  0.28
  23    4  0.14
  24    4  0.14
  25    5  0.17
  26    8  0.28

ACGTcount: A:0.12, C:0.05, G:0.10, T:0.73


Consensus pattern (25 bp):   
TTTTTTTTGCTTGATTTTTGAATTA
Done.