Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00330.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 903

Length: 1505
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30


Found at i:1401 original size:32 final size:31

Alignment explanation


    Indices: 1345--1405  Score: 86
    Period size: 32  Copynumber: 1.9  Consensus size: 31

       1335 AACCAACTTG

                               *            
       1345 AAAATTTTAAAACCTCCAATGACTCAGACCCA
          1 AAAATTTTAAAACCTCCAAGGACTC-GACCCA

                           **            
       1377 AAAATTTTAAAACCTTGAAGGACTCGACC
          1 AAAATTTTAAAACCTCCAAGGACTCGACC

       1406 TGCAATTTTA


Statistics
Matches: 26,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  31    4  0.15
  32   22  0.85

ACGTcount: A:0.43, C:0.25, G:0.10, T:0.23


Consensus pattern (31 bp):   
AAAATTTTAAAACCTCCAAGGACTCGACCCA
Done.