Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00339.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1979
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29


Found at i:1666 original size:27 final size:27

Alignment explanation


    Indices: 1627--1679  Score: 88
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       1617 TTGCAGACTG

                            *          
       1627 AAAAAGGGCCAGAGCATGGCACTCCTA
          1 AAAAAGGGCCAGAGCAGGGCACTCCTA

                    *                 
       1654 AAAAAGGGTCAGAGCAGGGCACTCCT
          1 AAAAAGGGCCAGAGCAGGGCACTCCT

       1680 TTTCTGATTC


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  27   24  1.00

ACGTcount: A:0.36, C:0.25, G:0.28, T:0.11


Consensus pattern (27 bp):   
AAAAAGGGCCAGAGCAGGGCACTCCTA
Done.