Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00969.P8

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4994
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33


Found at i:4819 original size:19 final size:19

Alignment explanation


    Indices: 4773--4820  Score: 71
    Period size: 19  Copynumber: 2.6  Consensus size: 19

       4763 GTATATATTT

                               
       4773 TAAA-TTTATTTAGGTAGA
          1 TAAATTTTATTTAGGTAGA

                 *             
       4791 TAAATCTTATTTAGGTAGA
          1 TAAATTTTATTTAGGTAGA

               *       
       4810 TAAGTTTTATT
          1 TAAATTTTATT

       4821 CATATTCTAG


Statistics
Matches: 26,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  18    4  0.15
  19   22  0.85

ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48


Consensus pattern (19 bp):   
TAAATTTTATTTAGGTAGA

Found at i:4896 original size:41 final size:41

Alignment explanation


    Indices: 4837--4924  Score: 158
    Period size: 41  Copynumber: 2.1  Consensus size: 41

       4827 CTAGGAATAT

                       *                              
       4837 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
          1 TTTT-TTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA

                                                     
       4879 TTTTTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
          1 TTTTTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA

                 
       4920 TTTTT
          1 TTTTT

       4925 CCAATTAGGA


Statistics
Matches: 45,  Mismatches: 1, Indels: 1
        0.96            0.02        0.02

Matches are distributed among these distances:
  41   41  0.91
  42    4  0.09

ACGTcount: A:0.30, C:0.03, G:0.14, T:0.53


Consensus pattern (41 bp):   
TTTTTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
Done.