Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00350.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2535
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:357 original size:26 final size:25

Alignment explanation


    Indices: 306--359  Score: 65
    Period size: 26  Copynumber: 2.1  Consensus size: 25

        296 GTATAAATAA

                   *           *     
        306 TTTTTTTGAAAACATTTTCTACAAT
          1 TTTTTTTAAAAACATTTTCGACAAT

                                       
        331 TTTTTTTAAATAACATTTT-GACTAAT
          1 TTTTTTTAAA-AACATTTTCGAC-AAT

               
        357 TTT
          1 TTT

        360 ATGCAAAATA


Statistics
Matches: 25,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  25   11  0.44
  26   14  0.56

ACGTcount: A:0.31, C:0.09, G:0.04, T:0.56


Consensus pattern (25 bp):   
TTTTTTTAAAAACATTTTCGACAAT
Done.