Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00354.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 846

Length: 1411
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28


Found at i:1411 original size:136 final size:136

Alignment explanation


    Indices: 1165--1411  Score: 422
    Period size: 136  Copynumber: 1.8  Consensus size: 136

       1155 AGTTGTTGGT

                                                                   ***     * 
       1165 GAACTACTTTCAAGTTTATTTCCATCTTTCAAGTGCCAAATCATTTTGGAACTATTTGAGTCCGA
          1 GAACTACTTTCAAGTTTATTTCCATCTTTCAAGTGCCAAATCATTTTGGAACTATCCAAGTCCAA

                                *                   *                        
       1230 AACTTTACTTCAATAAGACAGTGAAATGAATTATGTATTTCTAGATTATTGTGTTGCTTGTAAAC
         66 AACTTTACTTCAATAAGACAATGAAATGAATTATGTATTTATAGATTATTGTGTTGCTTGTAAAC

                  
       1295 TTAATC
        131 TTAATC

                      *                                                      
       1301 GAACTACTTTTAAGTTTATTTCCATCTTTCAAGTGCCAAATCATTTTGGAACTATCCAAGTCCAA
          1 GAACTACTTTCAAGTTTATTTCCATCTTTCAAGTGCCAAATCATTTTGGAACTATCCAAGTCCAA

                             *                            
       1366 AACTTTACTTCAATAAGGCAATGAAATGAATTATGTATTTATAGAT
         66 AACTTTACTTCAATAAGACAATGAAATGAATTATGTATTTATAGAT


Statistics
Matches: 103,  Mismatches: 8, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
 136  103  1.00

ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38


Consensus pattern (136 bp):   
GAACTACTTTCAAGTTTATTTCCATCTTTCAAGTGCCAAATCATTTTGGAACTATCCAAGTCCAA
AACTTTACTTCAATAAGACAATGAAATGAATTATGTATTTATAGATTATTGTGTTGCTTGTAAAC
TTAATC
Done.