Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00372.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 282

Length: 470
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33


Found at i:67 original size:25 final size:25

Alignment explanation


    Indices: 17--72  Score: 69
    Period size: 25  Copynumber: 2.2  Consensus size: 25

          7 AACTTGCTTA

                       *         *    
         17 AAAACTTTTTTTTTTTGCTTTTAAAG
          1 AAAACTTTTTTCTTTT-CTTTAAAAG

                                      
         43 AAAACTTTTGTTCTTTT-TTTAAAAG
          1 AAAACTTTT-TTCTTTTCTTTAAAAG

                 
         68 AAAAC
          1 AAAAC

         73 CCTTAATGCC


Statistics
Matches: 27,  Mismatches: 2, Indels: 3
        0.84            0.06        0.09

Matches are distributed among these distances:
  25   12  0.44
  26    9  0.33
  27    6  0.22

ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50


Consensus pattern (25 bp):   
AAAACTTTTTTCTTTTCTTTAAAAG
Done.