Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00376.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 834
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34


Found at i:418 original size:30 final size:30

Alignment explanation


    Indices: 353--438  Score: 84
    Period size: 30  Copynumber: 2.9  Consensus size: 30

        343 ATAGAATCAA

                  *     *                * 
        353 ATCACCGGCACCATCACCAC-TAGAAGTGTC
          1 ATCACCAGCACCGTCACC-CGTAGAAGTGCC

            *                             
        383 GTCACCAGCACCGTCACCCGTAGAAGTGCC
          1 ATCACCAGCACCGTCACCCGTAGAAGTGCC

                  *    *   *  *       
        413 ATCACCTGCACTGTCGCCTGTAGAAG
          1 ATCACCAGCACCGTCACCCGTAGAAG

        439 CTCCACATCC


Statistics
Matches: 46,  Mismatches: 9, Indels: 2
        0.81            0.16        0.04

Matches are distributed among these distances:
  29    1  0.02
  30   45  0.98

ACGTcount: A:0.26, C:0.36, G:0.21, T:0.17


Consensus pattern (30 bp):   
ATCACCAGCACCGTCACCCGTAGAAGTGCC
Done.