Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00389.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 289

Length: 483
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26


Found at i:395 original size:108 final size:108

Alignment explanation


    Indices: 200--437  Score: 449
    Period size: 108  Copynumber: 2.2  Consensus size: 108

        190 CCCACTACAA

                 *                                                           
        200 CAGGGAACAGCCCTGGTGTTGGACATTCTTTTGCAGACGTTGTTGAAGATATTGTTGAACAAAAC
          1 CAGGGCACAGCCCTGGTGTTGGACATTCTTTTGCAGACGTTGTTGAAGATATTGTTGAACAAAAC

                                                       
        265 CCAGCAAGCATTAGCGTGCAAGGCAATGGCAAGCGTTCAATTG
         66 CCAGCAAGCATTAGCGTGCAAGGCAATGGCAAGCGTTCAATTG

             *                                                               
        308 CGGGGCACAGCCCTGGTGTTGGACATTCTTTTGCAGACGTTGTTGAAGATATTGTTGAACAAAAC
          1 CAGGGCACAGCCCTGGTGTTGGACATTCTTTTGCAGACGTTGTTGAAGATATTGTTGAACAAAAC

                                                       
        373 CCAGCAAGCATTAGCGTGCAAGGCAATGGCAAGCGTTCAATTG
         66 CCAGCAAGCATTAGCGTGCAAGGCAATGGCAAGCGTTCAATTG

                            *     
        416 CAGGGCACAGCCCTGGAGTTGG
          1 CAGGGCACAGCCCTGGTGTTGG

        438 TCATGCTTAT


Statistics
Matches: 126,  Mismatches: 4, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
 108  126  1.00

ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24


Consensus pattern (108 bp):   
CAGGGCACAGCCCTGGTGTTGGACATTCTTTTGCAGACGTTGTTGAAGATATTGTTGAACAAAAC
CCAGCAAGCATTAGCGTGCAAGGCAATGGCAAGCGTTCAATTG
Done.