Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00394.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 417

Length: 695
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33


Found at i:652 original size:16 final size:16

Alignment explanation


    Indices: 633--665  Score: 66
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        623 TCTAGAATAC

                            
        633 TTAAAATAACACCAGA
          1 TTAAAATAACACCAGA

                            
        649 TTAAAATAACACCAGA
          1 TTAAAATAACACCAGA

             
        665 T
          1 T

        666 GGATCATTGA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.55, C:0.18, G:0.06, T:0.21


Consensus pattern (16 bp):   
TTAAAATAACACCAGA
Done.