Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00977.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 609

Length: 1015
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28


Found at i:468 original size:15 final size:15

Alignment explanation


    Indices: 448--478  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        438 ACTAAAAAAA

                           
        448 AAAAAATAGATAGAT
          1 AAAAAATAGATAGAT

                           
        463 AAAAAATAGATAGAT
          1 AAAAAATAGATAGAT

             
        478 A
          1 A

        479 GATGAGAGAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.68, C:0.00, G:0.13, T:0.19


Consensus pattern (15 bp):   
AAAAAATAGATAGAT

Found at i:468 original size:19 final size:19

Alignment explanation


    Indices: 444--481  Score: 58
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        434 AATAACTAAA

                               
        444 AAAAAAAAAATAGATAGAT
          1 AAAAAAAAAATAGATAGAT

                  * *          
        463 AAAAAATAGATAGATAGAT
          1 AAAAAAAAAATAGATAGAT

        482 GAGAGATAGA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.68, C:0.00, G:0.13, T:0.18


Consensus pattern (19 bp):   
AAAAAAAAAATAGATAGAT
Done.