Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00419.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 580

Length: 967
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.40


Found at i:462 original size:39 final size:39

Alignment explanation


    Indices: 417--498  Score: 119
    Period size: 39  Copynumber: 2.1  Consensus size: 39

        407 CACCGGCCAC

                   *                               
        417 CACCATCGTCGTTCACCAGTCAGGCAGTCACCACCGGTA
          1 CACCATCATCGTTCACCAGTCAGGCAGTCACCACCGGTA

                     *              *        *    *
        456 CACCATCATTGTTCACCAGTCAGGTAGTCACCATCGGTC
          1 CACCATCATCGTTCACCAGTCAGGCAGTCACCACCGGTA

                
        495 CACC
          1 CACC

        499 CGTCAATCTC


Statistics
Matches: 38,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  39   38  1.00

ACGTcount: A:0.23, C:0.38, G:0.18, T:0.21


Consensus pattern (39 bp):   
CACCATCATCGTTCACCAGTCAGGCAGTCACCACCGGTA
Done.