Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00420.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4060
ACGTcount: A:0.23, C:0.19, G:0.16, T:0.42


Found at i:3254 original size:16 final size:16

Alignment explanation


    Indices: 3235--3288  Score: 56
    Period size: 16  Copynumber: 3.4  Consensus size: 16

       3225 CGTTCCGAGG

                            
       3235 ATATCCCGGCTTAGGT
          1 ATATCCCGGCTTAGGT

                  ***       
       3251 ATATCCTTACTTAGG-
          1 ATATCCCGGCTTAGGT

               *       *    
       3266 ATAGCCCGGCTGAGGT
          1 ATATCCCGGCTTAGGT

                   
       3282 ATATCCC
          1 ATATCCC

       3289 ACCCGGCGGA


Statistics
Matches: 28,  Mismatches: 9, Indels: 2
        0.72            0.23        0.05

Matches are distributed among these distances:
  15   10  0.36
  16   18  0.64

ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30


Consensus pattern (16 bp):   
ATATCCCGGCTTAGGT
Done.