Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00421.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12204
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.33


Found at i:2733 original size:78 final size:78

Alignment explanation


    Indices: 2599--2749  Score: 248
    Period size: 78  Copynumber: 1.9  Consensus size: 78

       2589 CTCATAGTCT

                                              *                         *    
       2599 ACCAGTAAACCATGATCCCTTGATCTCACCAGCTGGGAGAGTTGGTGATCATGTTGATAATGATC
          1 ACCAGTAAACCATGATCCCTTGATCTCACCAGCTAGGAGAGTTGGTGATCATGTTGATAACGATC

                         
       2664 ACCATGGAGTTCG
         66 ACCATGGAGTTCG

                *      *                *                              *     
       2677 ACCATTAAACCCTGATCCCTTGATCTCATCAGCTAGGAGAGTTGGTGATCATGTTGATAGCGATC
          1 ACCAGTAAACCATGATCCCTTGATCTCACCAGCTAGGAGAGTTGGTGATCATGTTGATAACGATC

                    
       2742 ACCATGGA
         66 ACCATGGA

       2750 CTTTGTGTAC


Statistics
Matches: 67,  Mismatches: 6, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  78   67  1.00

ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27


Consensus pattern (78 bp):   
ACCAGTAAACCATGATCCCTTGATCTCACCAGCTAGGAGAGTTGGTGATCATGTTGATAACGATC
ACCATGGAGTTCG
Done.