Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00424.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1749
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28


Found at i:129 original size:39 final size:39

Alignment explanation


    Indices: 75--237  Score: 263
    Period size: 39  Copynumber: 4.2  Consensus size: 39

         65 CTTTGCCTTC

                     *                             
         75 TCCACCATCGTCGTTCACCAGTCAGGCAGTCACCACCGG
          1 TCCACCATCATCGTTCACCAGTCAGGCAGTCACCACCGG

                                                   
        114 TCCACCATCATCGTTCACCAGTCAGGCAGTCACCACCGG
          1 TCCACCATCATCGTTCACCAGTCAGGCAGTCACCACCGG

                                                   
        153 TCCACCATCATCGTTCACCAGTCAGGCAGTCACCACCGG
          1 TCCACCATCATCGTTCACCAGTCAGGCAGTCACCACCGG

                    *   *     *        *        *   
        192 TCCACCATTATAGGTTCAGCAGTCAGGTAGTCACCATCGG
          1 TCCACCATCAT-CGTTCACCAGTCAGGCAGTCACCACCGG

                  
        232 TCCACC
          1 TCCACC

        238 CGTCACCACC


Statistics
Matches: 117,  Mismatches: 6, Indels: 1
        0.94            0.05        0.01

Matches are distributed among these distances:
  39   87  0.74
  40   30  0.26

ACGTcount: A:0.23, C:0.39, G:0.19, T:0.20


Consensus pattern (39 bp):   
TCCACCATCATCGTTCACCAGTCAGGCAGTCACCACCGG

Done.