Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00429.F8

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2410
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28


Found at i:649 original size:90 final size:90

Alignment explanation


    Indices: 534--704  Score: 272
    Period size: 90  Copynumber: 1.9  Consensus size: 90

        524 GCAGAGTTTT

                                                                          *  
        534 AAACAACAACCTCCTCAAGGACTCCTGGAGAAGCAACAAAGTTTTAAACAATCTGAAAAACAGCA
          1 AAACAACAACCTCCTCAAGGACTCCTGGAGAAGCAACAAAGTTTTAAACAATCTGAAAAACAACA

                  *                  
        599 GAGTTTTCGCGGTGTTATGACAGAA
         66 GAGTTTCCGCGGTGTTATGACAGAA

                   *                                           *        *    
        624 AAACAACCACCTCCTCAACGG-CTCCTGGAGAAGCAACAAAGTTTTAAACACTCTGAAAAGCAAC
          1 AAACAACAACCTCCTCAA-GGACTCCTGGAGAAGCAACAAAGTTTTAAACAATCTGAAAAACAAC

                      *      
        688 AGAGTTTCCGTGGTGTT
         65 AGAGTTTCCGCGGTGTT

        705 TCAAGTGAGA


Statistics
Matches: 74,  Mismatches: 6, Indels: 2
        0.90            0.07        0.02

Matches are distributed among these distances:
  90   72  0.97
  91    2  0.03

ACGTcount: A:0.37, C:0.23, G:0.19, T:0.20


Consensus pattern (90 bp):   
AAACAACAACCTCCTCAAGGACTCCTGGAGAAGCAACAAAGTTTTAAACAATCTGAAAAACAACA
GAGTTTCCGCGGTGTTATGACAGAA

Done.