Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00437.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2037
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31


Found at i:1692 original size:28 final size:28

Alignment explanation


    Indices: 1649--1704  Score: 103
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       1639 AGAGGAAAGC

                       *                
       1649 CTATTGTGAACTAGTTTGATTGTCCCAA
          1 CTATTGTGAACCAGTTTGATTGTCCCAA

                                        
       1677 CTATTGTGAACCAGTTTGATTGTCCCAA
          1 CTATTGTGAACCAGTTTGATTGTCCCAA

       1705 TTTAGTTTAG


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  28   27  1.00

ACGTcount: A:0.25, C:0.20, G:0.18, T:0.38


Consensus pattern (28 bp):   
CTATTGTGAACCAGTTTGATTGTCCCAA
Done.