Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00440.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5090
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29


Found at i:4980 original size:4 final size:4

Alignment explanation


    Indices: 4971--5005  Score: 70
    Period size: 4  Copynumber: 8.8  Consensus size: 4

       4961 TATATACATG

                                                       
       4971 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT
          1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT

       5006 CTTGTGGTCA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   31  1.00

ACGTcount: A:0.23, C:0.00, G:0.26, T:0.51


Consensus pattern (4 bp):   
TGTA

Done.