Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00441.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3279
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30


Found at i:2349 original size:18 final size:18

Alignment explanation


    Indices: 2326--2361  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       2316 CATTAAAAAG

                       *      
       2326 AATGAATTGATGTTTTCC
          1 AATGAATTGATATTTTCC

                              
       2344 AATGAATTGATATTTTCC
          1 AATGAATTGATATTTTCC

       2362 TGTTTCGACT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.31, C:0.11, G:0.14, T:0.44


Consensus pattern (18 bp):   
AATGAATTGATATTTTCC
Done.