Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00442.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3230
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31


Found at i:1302 original size:18 final size:18

Alignment explanation


    Indices: 1279--1314  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       1269 AGTCGAAACA

                  *           
       1279 GGAAAATATCAATTCATT
          1 GGAAAACATCAATTCATT

                              
       1297 GGAAAACATCAATTCATT
          1 GGAAAACATCAATTCATT

       1315 CTTTTTAATG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.44, C:0.14, G:0.11, T:0.31


Consensus pattern (18 bp):   
GGAAAACATCAATTCATT
Done.