Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00449.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 504

Length: 841
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32


Found at i:739 original size:23 final size:23

Alignment explanation


    Indices: 709--754  Score: 83
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        699 TACGTCAAAC

                          *        
        709 CTGTGTTTGAATTATAAGTGCCA
          1 CTGTGTTTGAATTAAAAGTGCCA

                                   
        732 CTGTGTTTGAATTAAAAGTGCCA
          1 CTGTGTTTGAATTAAAAGTGCCA

        755 ACCTTGTTAG


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  23   22  1.00

ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37


Consensus pattern (23 bp):   
CTGTGTTTGAATTAAAAGTGCCA
Done.