Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00460.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3201
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35


Found at i:2419 original size:28 final size:28

Alignment explanation


    Indices: 2385--2449  Score: 114
    Period size: 27  Copynumber: 2.4  Consensus size: 28

       2375 TAAAATTTAC

                                   *    
       2385 TTTAAATTTAAATTGATCGGATTGAATT
          1 TTTAAATTTAAATTGATCGGATTAAATT

                                        
       2413 TTTAAATTT-AATTGATCGGATTAAATT
          1 TTTAAATTTAAATTGATCGGATTAAATT

                      
       2440 TTTAAATTTA
          1 TTTAAATTTA

       2450 CGTCAAAATT


Statistics
Matches: 35,  Mismatches: 1, Indels: 2
        0.92            0.03        0.05

Matches are distributed among these distances:
  27   26  0.74
  28    9  0.26

ACGTcount: A:0.37, C:0.03, G:0.11, T:0.49


Consensus pattern (28 bp):   
TTTAAATTTAAATTGATCGGATTAAATT

Done.