Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00476.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2001
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.36


Found at i:90 original size:50 final size:49

Alignment explanation


    Indices: 13--113  Score: 166
    Period size: 50  Copynumber: 2.0  Consensus size: 49

          3 CCTATATATT

                                              *              
         13 TTTCATTCGGTTATTTTTGTCACCATCTTCACTATTCTTCTTCTTCTTC
          1 TTTCATTCGGTTATTTTTGTCACCATCTTCACTACTCTTCTTCTTCTTC

                        *                   *                 
         62 TTTCATTCGGTTGTTTCTTGTCACCATCTTCAGTACTCTTCTTCTTCTTC
          1 TTTCATTCGGTTATTT-TTGTCACCATCTTCACTACTCTTCTTCTTCTTC

              
        112 TT
          1 TT

        114 CTGCTGCTGC


Statistics
Matches: 48,  Mismatches: 3, Indels: 1
        0.92            0.06        0.02

Matches are distributed among these distances:
  49   15  0.31
  50   33  0.69

ACGTcount: A:0.11, C:0.27, G:0.08, T:0.54


Consensus pattern (49 bp):   
TTTCATTCGGTTATTTTTGTCACCATCTTCACTACTCTTCTTCTTCTTC
Done.