Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00496.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 649

Length: 1082
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.27


Found at i:1016 original size:17 final size:17

Alignment explanation


    Indices: 994--1027  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        984 CAAGCTTTGT

                             
        994 CATCTAATGTAAATTAG
          1 CATCTAATGTAAATTAG

                             
       1011 CATCTAATGTAAATTAG
          1 CATCTAATGTAAATTAG

       1028 ATGAACTCTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35


Consensus pattern (17 bp):   
CATCTAATGTAAATTAG
Done.