Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00499.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 901

Length: 1503
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32


Found at i:96 original size:13 final size:13

Alignment explanation


    Indices: 78--102  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

         68 ATATTGTTTT

                         
         78 TTCAGTGTTTTAA
          1 TTCAGTGTTTTAA

                        
         91 TTCAGTGTTTTA
          1 TTCAGTGTTTTA

        103 GTTGGATTTT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.20, C:0.08, G:0.16, T:0.56


Consensus pattern (13 bp):   
TTCAGTGTTTTAA
Done.