Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00405.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2365
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35


Found at i:627 original size:18 final size:18

Alignment explanation


    Indices: 606--656  Score: 59
    Period size: 18  Copynumber: 2.8  Consensus size: 18

        596 TTTTCTTCTC

                        *      
        606 CTCATTATTATTCT-CATT
          1 CTCATTATTATTATAC-TT

                 *            
        624 CTCATCATTATTATACTT
          1 CTCATTATTATTATACTT

              *            
        642 CTTATTATTATTATA
          1 CTCATTATTATTATA

        657 GTAGAGAGTT


Statistics
Matches: 28,  Mismatches: 4, Indels: 2
        0.82            0.12        0.06

Matches are distributed among these distances:
  18   27  0.96
  19    1  0.04

ACGTcount: A:0.27, C:0.18, G:0.00, T:0.55


Consensus pattern (18 bp):   
CTCATTATTATTATACTT
Done.