Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00508.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4475
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34


Found at i:3219 original size:5 final size:5

Alignment explanation


    Indices: 3209--3233  Score: 50
    Period size: 5  Copynumber: 5.0  Consensus size: 5

       3199 TCCCCTAAAT

                                         
       3209 GCCAA GCCAA GCCAA GCCAA GCCAA
          1 GCCAA GCCAA GCCAA GCCAA GCCAA

       3234 AAAAACTCCC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   20  1.00

ACGTcount: A:0.40, C:0.40, G:0.20, T:0.00


Consensus pattern (5 bp):   
GCCAA

Done.