Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00537.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 978

Length: 1630
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.36


Found at i:1085 original size:13 final size:13

Alignment explanation


    Indices: 1067--1093  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

       1057 GGGAGGTTCC

                         
       1067 ACAGTTTTTTAAA
          1 ACAGTTTTTTAAA

                         
       1080 ACAGTTTTTTAAA
          1 ACAGTTTTTTAAA

             
       1093 A
          1 A

       1094 TAAGCTTTTA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.41, C:0.07, G:0.07, T:0.44


Consensus pattern (13 bp):   
ACAGTTTTTTAAA
Done.