Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00544.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 229

Length: 382
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.27


Found at i:377 original size:99 final size:98

Alignment explanation


    Indices: 111--378  Score: 269
    Period size: 99  Copynumber: 2.7  Consensus size: 98

        101 GAAAGGCTCT

                       *                                                     
        111 CAGAAGATCGAGTTTATACAGA-TCAACCAATTTACTC--AGAACCTAGGGTTAACTCAGTTCAA
          1 CAGAAGAT-GAATTTATAC-GACTCAACCAATTTACTCGGAGAA--TAGGGTTAACTCAGTTCAA

            *    **    *            *   *        
        173 GCAAACCAGTTTAATAATCATATTGGAAGTAGAATAC
         62 ACAAATAAGTTCAATAATCATATTAGAAATAGAATAC

                                *     * **   *         *                     
        210 CAGAAGATGAAGTTTATACGGCTCAATCGGTTTGCTCGGA-ATGTAGGGTTAACTC-GATTCAAG
          1 CAGAAGATGAA-TTTATACGACTCAACCAATTTACTCGGAGA-ATAGGGTTAACTCAG-TTCAA-

                                            ** * 
        273 A-AAATAAGTTCAATAATCATATTAGAAATAGCCTGC
         62 ACAAATAAGTTCAATAATCATATTAGAAATAGAATAC

                                                                             
        309 CAGAAGATGGAATTTATACGACTCAACCAATTTACTCGGAGAATAGGGTTAACTCAGTTCAAACA
          1 CAGAAGAT-GAATTTATACGACTCAACCAATTTACTCGGAGAATAGGGTTAACTCAGTTCAAACA

                 
        374 AATAA
         65 AATAA

        379 TCTC


Statistics
Matches: 136,  Mismatches: 22, Indels: 22
        0.76            0.12        0.12

Matches are distributed among these distances:
  98    5  0.04
  99  124  0.91
 100    6  0.04
 101    1  0.01

ACGTcount: A:0.38, C:0.17, G:0.18, T:0.26


Consensus pattern (98 bp):   
CAGAAGATGAATTTATACGACTCAACCAATTTACTCGGAGAATAGGGTTAACTCAGTTCAAACAA
ATAAGTTCAATAATCATATTAGAAATAGAATAC
Done.