Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00545.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1917
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32


Found at i:1772 original size:43 final size:43

Alignment explanation


    Indices: 1711--1796  Score: 163
    Period size: 43  Copynumber: 2.0  Consensus size: 43

       1701 CAAAATAGTT

                                                       
       1711 AGTAAAATAATCCTCCAAACCACAAACTTGTTCGGGAGATTGA
          1 AGTAAAATAATCCTCCAAACCACAAACTTGTTCGGGAGATTGA

                                            *          
       1754 AGTAAAATAATCCTCCAAACCACAAACTTGTTTGGGAGATTGA
          1 AGTAAAATAATCCTCCAAACCACAAACTTGTTCGGGAGATTGA

       1797 TACTATAGTC


Statistics
Matches: 42,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  43   42  1.00

ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24


Consensus pattern (43 bp):   
AGTAAAATAATCCTCCAAACCACAAACTTGTTCGGGAGATTGA
Done.