Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00551.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2188
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.32


Found at i:654 original size:30 final size:30

Alignment explanation


    Indices: 618--693  Score: 152
    Period size: 30  Copynumber: 2.5  Consensus size: 30

        608 CTGCCTCCCT

                                          
        618 GCAGTATTATCCACCTTCACAACCGGAGCC
          1 GCAGTATTATCCACCTTCACAACCGGAGCC

                                          
        648 GCAGTATTATCCACCTTCACAACCGGAGCC
          1 GCAGTATTATCCACCTTCACAACCGGAGCC

                            
        678 GCAGTATTATCCACCT
          1 GCAGTATTATCCACCT

        694 CCTCAAAACC


Statistics
Matches: 46,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   46  1.00

ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22


Consensus pattern (30 bp):   
GCAGTATTATCCACCTTCACAACCGGAGCC
Done.