Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00565.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4954
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.28


Found at i:2401 original size:6 final size:6

Alignment explanation


    Indices: 2384--2415  Score: 55
    Period size: 6  Copynumber: 5.3  Consensus size: 6

       2374 AAAAAATAAC

                    *                            
       2384 AAAAAT AGAAAT AAAAAT AAAAAT AAAAAT AA
          1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AA

       2416 TAATCTAATT


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16


Consensus pattern (6 bp):   
AAAAAT

Done.